Parasites (by year)
- Kudoa minithyrsites Whipps, Adlard, Bryant, Lester, Findlay, and Kent 2003 (Myxozoa)
- Kudoa quadricornis Whipps, Adlard, Bryant, and Kent 2003 (Myxozoa)
- Kudoa permulticapsula Whipps, Adlard, Bryant, and Kent 2003 (Myxozoa)
- Kudoa hypoepicardialis Blaylock, Bullard, and Whipps 2004 (Myxozoa)
- Sphaeromyxa zaharoni Diamant, Whipps, and Kent 2004 (Myxozoa)
- Kudoa grammatorcyni Adlard, Bryant, Whipps, and Kent 2005 (Myxozoa)
- Kudoa scomberomori Adlard, Bryant, Whipps, and Kent 2005 (Myxozoa)
- Kudoa thalassomi Adlard, Bryant, Whipps, and Kent 2005 (Myxozoa)
- Myxidium hardella Garner, Bartholomew, Whipps, Nordhausen, and Raiti 2005 (Myxozoa)
- Myxidium melleni Jirku, Bolek, Whipps, Janovy, Kent, and Modry 2006 (Myxozoa). Now Cystodiscus melleni.
- Myxodavisia Zhao, Zhou, Kent, and Whipps 2008 (Myxozoa). This name replaced the preoccupied Davisia
- Myxodavisia sebastisca Zhao, Zhou, Kent, and Whipps 2008 (Myxozoa)
- Myxobolus ampullicapsulatus Zhao, Sun, Kent, Deng, and Whipps 2008 (Myxozoa)
- Henneguya akule Work, Takata, Whipps, and Kent 2008 (Myxozoa)
- Myxidium scripta Roberts, Whipps, Bartholomew, Jacobson, and Schneider 2008 (Myxozoa)
- Myxobolus fryeri Ferguson, Atkinson, Whipps, and Kent 2008 (Myxozoa)
- Acauda Whipps 2011 (Myxozoa)
- Acauda hoffmani Whipps 2011 (Myxozoa)
- Myxobolus honghuensis Liu, Whipps, Gu, Zeng, and Huang 2012 (Myxozoa)
- Sphaeromyxa kenti Whipps and Font 2013 (Myxozoa)
- Ellipsomyxa adlardi Whipps and Font 2013 (Myxozoa)
- Myxobolus oralis Liu, Whipps, Nie, and Gu 2014 (Myxozoa)
- Myxidium streisingeri Whipps, Murray, and Kent 2015 (Myxozoa)
- Sphaeromyxa photopectoralis Chen, Yang, Whipps, Peng, Zhao 2020 (Myxozoa)
- Sphaeromyxa sebastisca Chen, Yang, Whipps, Peng, Zhao 2020 (Myxozoa)
- Sphaeromyxa xiamenensis Chen, Yang, Whipps, Peng, Zhao 2020 (Myxozoa)
- Thelohanellus magnacysta Ksepka, Whelan, Whipps, and Bullard 2020 (Myxozoa)
- Myxidium pseudocuneiforme Chen, Zhang, Whipps, Yang, Zhao 2021 (Myxozoa)
- Ceratomyxa binhthuanensis Chinh, Ha, Doanh, Yurakhno, Shirakashi, Hallett, Whipps 2022 (Myxozoa)
- Myxobolus hoabinhensis Chinh, Tham, Yurakhno, Doanh, Whipps, Shirakashi 2022 (Myxozoa)
- Kudoa igori Yurakhno, Slynko, Chinh, Ha, and Whipps 2022 (Myxozoa)
- Kudoa borimiri Yurakhno, Slynko, Chinh, Ha, and Whipps 2022 (Myxozoa)
- Myxobolus stuartae, McAllister, Cloutman, Camus, Trauth, Ray, Robison, Whipps 2022 (Myxozoa)
- Myxobolus eszterbaueri, Chinh, Ha, Doanh, Eiras, Whipps, Shirakashi 2023 (Myxozoa)
Bacteria
- Mycobacterium salmoniphilum (ex Ross 1960) Whipps, Butler, Pourahmad, Watral, and Kent 2007
- Mycobacterium saopaulense Nogueira, Whipps, Matsumoto, Chimara, Droz, Tortoli, de Freitas, Cnockaert, Palomino, Martin, Vandamme, Leao 2015